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Metagenomics of the viral community in three cattle slurry samples

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posted on 31.05.2019, 13:43 by Pavelas Sazinas, Slawomir Michniewski, Branko Rihtman, Tamsin Redgwell, Aurelija Grigonyte, Amelia Brett, Bethany Guck, Rebecca Smith, Steven P. Hooton, Jon L. Hobman, Andrew D. Millard
The diversity of viruses in slurries from dairy farming remains largely uncharacterized. Here we report viral diversity found in cattle slurry from a dairy farm in the East Midlands in the United Kingdom. The same slurry tank was sampled in three consecutive years, and the viral fraction was isolated and sequenced.

Funding

Illumina sequencing was performed at the Warwick Medical School, University of Warwick. Bioinformatic analysis was carried out using MRC CLIMB Infrastructure MR/L015080/1. This research was supported by teaching funds from the School of Life Sciences, University of Warwick, to A.D.M. J.L.H., S.P.H., and A.D.M. are funded by NERC AMR-EVAL FARMS (NE/N019881/1).

History

Citation

Microbiology Resource Announcements, 2019, 8, pp. e01442-18

Author affiliation

/Organisation/COLLEGE OF LIFE SCIENCES/School of Medicine/Department of Infection, Immunity and Inflammation

Version

VoR (Version of Record)

Published in

Microbiology Resource Announcements

Publisher

American Society for Microbiology

eissn

2576-098X

Acceptance date

07/01/2019

Copyright date

2019

Available date

31/05/2019

Publisher version

https://mra.asm.org/content/8/7/e01442-18

Notes

This whole-genome shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number PRJEB28736.

Language

en

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